ONTOLOGY SOURCE REFERENCE
Term Source Name	"CHEBI"	"OBI"	"BTO"	"EFO"	"NCBITAXON"	"SYMP"	"OMIM"	"SNOMEDCT"	"DOID"	
Term Source File	"http://data.bioontology.org/ontologies/CHEBI"	"http://data.bioontology.org/ontologies/OBI"	"http://data.bioontology.org/ontologies/BTO"	"http://data.bioontology.org/ontologies/EFO"	"http://data.bioontology.org/ontologies/NCBITAXON"	"http://data.bioontology.org/ontologies/SYMP"	"http://data.bioontology.org/ontologies/OMIM"	"http://data.bioontology.org/ontologies/SNOMEDCT"	"http://data.bioontology.org/ontologies/DOID"	
Term Source Version	"78"	"21"	"20"	"111"	"2"	"13"	"4"	"7"	"399"	
Term Source Description	"Chemical Entities of Biological Interest Ontology"	"Ontology for Biomedical Investigations"	"BRENDA Tissue and Enzyme Source Ontology"	"Experimental Factor Ontology"	"National Center for Biotechnology Information (NCBI) Organismal Classification"	"Symptom Ontology"	"Online Mendelian Inheritance in Man"	"Systematized Nomenclature of Medicine - Clinical Terms"	"Human Disease Ontology"	
INVESTIGATION
Investigation Identifier	"Inv_001"
Investigation Title	"Investigation"
Investigation Description	""
Investigation Submission Date	""
Investigation Public Release Date	""
Comment [Created with configuration]	""
Comment [Last Opened With Configuration]	""
Comment[Created With Configuration]	""
Comment[Last Opened With Configuration]	""
INVESTIGATION PUBLICATIONS
Investigation PubMed ID	""
Investigation Publication DOI	""
Investigation Publication Author List	""
Investigation Publication Title	""
Investigation Publication Status	""
Investigation Publication Status Term Accession Number	""
Investigation Publication Status Term Source REF	""
INVESTIGATION CONTACTS
Investigation Person Last Name	""
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Investigation Person Mid Initials	""
Investigation Person Email	""
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Investigation Person Fax	""
Investigation Person Address	""
Investigation Person Affiliation	""
Investigation Person Roles	""
Investigation Person Roles Term Accession Number	""
Investigation Person Roles Term Source REF	""
STUDY
Study Identifier	"GSE11223"
Study Title	"Colon biopsies from ulcerative colitis patients and healthy controls"
Study Description	"Transcriptional profiling of colon epithelial biopsies from ulcerative colitis patients and healthy control donors. Some patients are currently taking NSAIDs, including aspirin, balsalazide, mesalazine, naproxen, paracetamol, and sulphasalazine."
Comment[Study Grant Number]	""
Comment[Study Funding Agency]	""
Study Submission Date	""
Study Public Release Date	""
Study File Name	"s_GSE11223.txt"
STUDY DESIGN DESCRIPTORS
Study Design Type	""
Study Design Type Term Accession Number	""
Study Design Type Term Source REF	""
STUDY PUBLICATIONS
Study PubMed ID	""
Study Publication DOI	""
Study Publication Author List	""
Study Publication Title	""
Study Publication Status	""
Study Publication Status Term Accession Number	""
Study Publication Status Term Source REF	""
STUDY FACTORS
Study Factor Name	"x"
Study Factor Type	"x"
Study Factor Type Term Accession Number	""
Study Factor Type Term Source REF	""
STUDY ASSAYS
Study Assay File Name	"a_GSE11223_transcription_profiling_DNA_microarray.txt"
Study Assay Measurement Type	"transcription profiling"
Study Assay Measurement Type Term Accession Number	"http://purl.obolibrary.org/obo/OBI_0000424"
Study Assay Measurement Type Term Source REF	"OBI"
Study Assay Technology Type	"DNA microarray"
Study Assay Technology Type Term Accession Number	"http://purl.obolibrary.org/obo/OBI_0400148"
Study Assay Technology Type Term Source REF	"OBI"
Study Assay Technology Platform	"GPL1708"
STUDY PROTOCOLS
Study Protocol Name	"RNA extraction"	"labeling"	"nucleic acid hybridization"	"data collection"	"normalization data transformation"	"data transformation"	"sample collection"
Study Protocol Type	"RNA extraction"	"labeling"	"nucleic acid hybridization"	"data collection"	"normalization data transformation"	"data transformation"	"sample collection"
Study Protocol Type Term Accession Number	""	""	""	""	""	""	""
Study Protocol Type Term Source REF	""	""	""	""	""	""	""
Study Protocol Description	"micro total RNA isolation from animal tissues protocol (Qiagen, Valencia, CA)"	"T7 RNA polymerase single round of linear amplification"	"18 hours at 60¡C with constant rotation on Agilent WHG"	"Agilent scanner according to the manufacturer's protocol"	"the data were extracted and normalized according to the default settings of Agilent Feature Extraction 7.5. LOWESS normalization, background subtraction, and ratio computation."	""	""
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Study Protocol Components Type Term Source REF	""	""	""	""	""	""	""
STUDY CONTACTS
Study Person Last Name	"Abbas"
Study Person First Name	"Alex"
Study Person Mid Initials	""
Study Person Email	"abbas@gene.com"
Study Person Phone	""
Study Person Fax	""
Study Person Address	"1 DNA Way
South San Francisco
CA
94080
USA"
Study Person Affiliation	"Genentech, Inc."
Study Person Roles	""
Study Person Roles Term Accession Number	""
Study Person Roles Term Source REF	""
Comment[Study Person REF]	""