ONTOLOGY SOURCE REFERENCE
Term Source Name	"CHEBI"	"BTO"	"NCBITAXON"	"XCO"	"UBERON"	
Term Source File	"http://data.bioontology.org/ontologies/CHEBI"	"http://data.bioontology.org/ontologies/BTO"	"http://data.bioontology.org/ontologies/NCBITAXON"	"http://data.bioontology.org/ontologies/XCO"	"http://data.bioontology.org/ontologies/UBERON"	
Term Source Version	"78"	"20"	"2"	"33"	"191"	
Term Source Description	"Chemical Entities of Biological Interest Ontology"	"BRENDA Tissue and Enzyme Source Ontology"	"National Center for Biotechnology Information (NCBI) Organismal Classification"	"Experimental Conditions Ontology"	"Uber Anatomy Ontology"	
INVESTIGATION
Investigation Identifier	""
Investigation Title	""
Investigation Description	""
Investigation Submission Date	""
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Comment [Created with configuration]	""
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Comment[Created With Configuration]	""
Comment[Last Opened With Configuration]	""
INVESTIGATION PUBLICATIONS
Investigation PubMed ID	""
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INVESTIGATION CONTACTS
Investigation Person Last Name	""
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Investigation Person Roles Term Accession Number	""
Investigation Person Roles Term Source REF	""
STUDY
Study Identifier	"E-GEOD-38406"
Study Title	"Differential functional effects of Indomethacin along the human fetal intestine"
Study Description	"Transcriptional profiling of small and large intestinal explants cultured in the absence or in the presence of Indomethacin (1 µM). Two-condition experiment, control intestinal explants vs Indomethacin intestinal explants #4 replicates were normalized in a separate batch from the other replicates."
Comment[Study Grant Number]	""
Comment[Study Funding Agency]	""
Study Submission Date	""
Study Public Release Date	"2013-01-01"
Study File Name	"s_E-GEOD-38406_study_samples.txt"
STUDY DESIGN DESCRIPTORS
Study Design Type	"transcription profiling by array"
Study Design Type Term Accession Number	""
Study Design Type Term Source REF	""
STUDY PUBLICATIONS
Study PubMed ID	"23261704"
Study Publication DOI	"10.1016/j.ygeno.2012.12.003"
Study Publication Author List	"Perron N, Tremblay E, Ferretti E, Babakissa C, Seidman EG, Levy E, Ménard D, Beaulieu JF."
Study Publication Title	"Deleterious effects of indomethacin in the mid-gestation human intestine."
Study Publication Status	"Published"
Study Publication Status Term Accession Number	""
Study Publication Status Term Source REF	""
STUDY FACTORS
Study Factor Name	"gestational age"	"organism part"	"drug"
Study Factor Type	"gestational age"	"organism part"	"drug"
Study Factor Type Term Accession Number	""	""	""
Study Factor Type Term Source REF	""	""	""
STUDY ASSAYS
Study Assay File Name	"a_E-GEOD-38406_GeneChip_assay.txt"
Study Assay Measurement Type	"transcription profiling"
Study Assay Measurement Type Term Accession Number	""
Study Assay Measurement Type Term Source REF	""
Study Assay Technology Type	"DNA microarray"
Study Assay Technology Type Term Accession Number	""
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Study Assay Technology Platform	""
STUDY PROTOCOLS
Study Protocol Name	"P-GSE38406-2"	"P-GSE38406-3"	"P-GSE38406-4"	"P-GSE38406-5"	"P-GSE38406-6"	"P-GSE38406-1"
Study Protocol Type	"nucleic_acid_extraction"	"labeling"	"hybridization"	"image_acquisition"	"feature_extraction"	"bioassay_data_transformation"
Study Protocol Type Term Accession Number	""	""	""	""	""	""
Study Protocol Type Term Source REF	""	""	""	""	""	""
Study Protocol Description	"Total RNA extracted using Trizol following manufacturer's instructions and then purified on QIAgen RNeasy columns."	"Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays"	"Standard Illumina hybridization protocol"	"Standard Illumina scanning protocol"	"The data were normalised using quantile normalisation with Illumina GenomeStudio software. #4 replicates were normalized in a separate batch from the other replicates."	"ID_REF =  VALUE = quantile normalized Detection Pval = "
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Study Protocol Components Type Term Accession Number	""	""	""	""	""	""
Study Protocol Components Type Term Source REF	""	""	""	""	""	""
STUDY CONTACTS
Study Person Last Name	"Beaulieu"	"Tremblay"	"Ferretti"	"Corentin"	"Perron"	"Seidman"	"Levy"	"Ménard"	"Beaulieu"
Study Person First Name	"Jean-François"	"Eric"	"Emanuela"	"Babakissa"	"Nancy"	"Ernest"	"Emile"	"Daniel"	"Jean-François"
Study Person Mid Initials	""	""	""	""	""	""	""	""	""
Study Person Email	"Jean-Francois.Beaulieu@Usherbrooke.ca"	""	""	""	""	""	""	""	""
Study Person Phone	"(819) 346-1110 x12369"	""	""	""	""	""	""	""	""
Study Person Fax	"(819) 564-5320"	""	""	""	""	""	""	""	""
Study Person Address	"Anatomie & biologie cellulaire, Université de Sherbrooke, 3001, 12ème avenue nord, Sherbrooke, Québec, Canada"	""	""	""	""	""	""	""	""
Study Person Affiliation	"Université de Sherbrooke"	""	""	""	""	""	""	""	""
Study Person Roles	"submitter"	""	""	""	""	""	""	""	""
Study Person Roles Term Accession Number	""	""	""	""	""	""	""	""	""
Study Person Roles Term Source REF	""	""	""	""	""	""	""	""	""
Comment[Study Person REF]	""	""	""	""	""	""	""	""	""